.. REMIND-Cancer documentation master file, created by
   sphinx-quickstart on Sun Apr 13 10:09:09 2025.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Documentation for the REMIND-Cancer Filtering Pipeline
=======================================================

Add your content using ``reStructuredText`` syntax. See the
`reStructuredText <https://www.sphinx-doc.org/en/master/usage/restructuredtext/index.html>`_
documentation for details.


.. toctree::
   :maxdepth: 3
   :caption: Contents:
   
   README.md
   src/README.md
   src/utils/README.md
   src/pipeline_setup/README.md
   src/pipeline/README.md
   paper/README.md
   examples/README.md